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Hi,
KTU:klustering is using a tremendous amount of memory in my machine. Even dedicating around 30 GB of swap memory and 8Gb of RAM would not be enough for around 30k input sequences (20Mb of a plain…
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Hello,
I was trying to use q2-SCRuB and am try to follow your tutorial. I pip installed in a qiime environment in NAU's supercomputer.
The first error I ran into was that steps 3,4,5 on "Inputs …
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The overall idea is to allow toggling between the 'cells' view (umap/tsne) with a 'genes' view (heatmap probably) so that cellxgene users can get a sense of the overall shape of the dataset from a gen…
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'Omics terms can be difficult to learn. Having them described in a single page may help new comers to overcome this barrier quickly and transfer knowhow that may be a pain to transfer through more for…
meren updated
2 years ago
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The adult microbiome of healthy and otitis patients: Definition of the core healthy and diseased ear microbiomes – Maria Burton et al. – PlosOne
https://journals.plos.org/plosone/article?id=10.1371/j…
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I applied your script on my data. As you can see in the metadata I have a column called traitment with ( CTRL , TR1 ,TR2 and TR4)
ko_abundance_file
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From [this forum post](https://groups.google.com/d/topic/qiime-forum/C0T8qxSlLzI/discussion), I think the option documentation for split_libraries_fastq.py's -q/--phred_quality_threshold, -r/--max_bad…
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Can we add function to facilitate the plotting of abundance heatmaps. This is a need we often encounter in studies.
Starting point could be for instance existing, similar, plotting functionality fr…
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As a TL I would to check the report consistency, identify and flag inconsistencies so that we can improve confidence in the report.
**Acceptance Criteria**
- [ ] Identify report rows where the m…
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The current `Dataset` has type and subtype which is slightly problematic. `Type` is really indicating the row format used in the DwC-A and causes problems since a checklist can have occurrences, and a…