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In the DESCRIPTION file, add more info about Authors
- Link to Twitter/LinkedIn or social media.
- Affiliation
- Location /Time Zone
Recently I was trying to find Bioc developer in Boston …
aedin updated
4 years ago
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Hi Ye,
Not sure if this is appropriate to ask, but for some reason, on Step 3.3 Removing duplicates, Picard MarkDuplicate command reports 0 duplicates. I'm using the same dataset as the tutorial an…
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Dear author,
I would like to compare the assembly of both psiclass and stringtie.
In stringtie, the user could specify --rf or --fr for strand-specific RNA-seq library instead of output XS tag …
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https://genie-public-beta.cbioportal.org/study/summary?id=brca_akt1_genie_2019%2Claml_tcga_pan_can_atlas_2018%2Cacc_tcga_pan_can_atlas_2018%2Cblca_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018…
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With programs like Seurat and Scanpy + scirpy, we visualize the gene expression and VDJ data. I am wondering what output files from Trust4 can be used for the same purpose. Do we need to create the a …
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### Is there an existing issue for this?
- [X] I have searched existing issues
### Current Behavior
mu_feature_dfci\DfciPkg\UnitTests\DfciTests\Support\Tools\DfciVerify.exe depends on libcrypto-1_1…
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Hello!
First of all, thank you for the development and continuous maintenance of this essential tool.
I am assembling plant genomes that have ~65 repeat content with ~40 X coverage HiFi data.
I…
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I followed the setup instructions, but it didn't work out of the box:
```
$ git clone git@github.com:dfci/matchminer-api.git
$ cd matchminer-api
$ ./setup.sh
```
I ran into and resolved two …
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Apt-get fails to install software, e.g.
```
jdm@tod:~$ sudo apt-get install csh
Reading package lists... Done
Building dependency tree
Reading state information... Done
The following packages …
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Hello, I have run the TRUST4 based on our bulk RNAseq cohort (PE150bp, ribo-zero), where fastq is input, but the results are not consistent with other immune metrics (GEP based). I want to optimize th…