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yesterday, I spent some time digging into a sourmash use case with @shannonekj, and a few different reasonably generic utility script needs emerged.
the code for this is [in a private repository](h…
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Hi Chen,
I have no issues with the package and I was able to carry out my analysis without having any hitch. However, is it possible to increase the font size of the image generated especially from t…
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Hi,
I am having an issue in the pathway annotation in ggpicrust2. I have tried the other workflow with the same results. I'm not behind a firewall or proxy, I can access the url on my browser and hav…
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Microbial Diversity and Composition in Six Different Gastrointestinal Sites among Participants Undergoing Upper Gastrointestinal Endoscopy in Henan, China – Minjuan Li – Microbiology Spectrum
https:/…
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### Description of the bug
When running a large number of samples (~700 in the samplesheet) through the differentialabundance pipeline, the `PLOT_EXPLORATORY` module will generate an OOM error, ev…
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Hello! Very nice work!
I'm looking for help with running qiime2 files as import files (**contain tree file**) :
```
test_files %
mp_balance_clade(
.abundance = Abundance,
force = TRUE,
relativ…
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Hi,
i am wondering how good is xpore detect other RNA modification like ψ and ADP-ribosylation or is it mainly designed for m6A/RNA methylation?
Thanks in advance!
Yun
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Dear Author,
Hope you are well. Sorry to reach you again. I have completed the alignment and have some sample workflow from my colleages regarding how to generating gene/transcript count from abun…
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Check out this article.
http://shiny.rstudio.com/articles/modules.html
In order to work together effectively, and to make PathoStats as flexible as possible, we are going to need to write code that c…