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Hello,
Thank you for the great tool.
One question I have after reading the paper, also looking the code, is seems that the peak-gene pairs are predicted using cells from one cell type (cluster)…
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@rawnakhoque I asked the PDF in our lab and he showed me that everything has been done in bash. Follow the installation and basic configuration step by step [here](http://homer.ucsd.edu/homer/introduc…
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I have been looking into using the RNA-seq data but have some questions on the gene annotations for the V2-RNA-seq data that I get from running your GDC-prepare-function.
How do the 21022 genes tha…
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- [ ] Finish molQTL plotting scripts and plot coverage data for bunch of Colocalized QTL effects
- [ ] Add more GWAS. Need to edit some scripts to accommodate binary outcomes for some gwas... see (…
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Hello, I'm trying to replicate your prediction results for "CD4-positive_helper_T_cell-ENCODE" published in [Nature at 2021](https://www.nature.com/articles/s41586-021-03446-x#Sec9): as shown in the […
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Hello,
I am experiencing an issue while running the SvAnna CLI tool. I receive the following error message when executing the command:
ERROR o.m.svanna.cli.cmd.PrioritizeCommand - Error: Error rea…
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The attached file does not sort properly by chromosome start and stop:
[tf_locus.bed.gz](https://github.com/biocore-ntnu/pyranges/files/7018207/tf_locus.bed.gz)
```
>>> import pyranges
>>> dat…
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Hi,
I am kind of new. I installed cat on slurm as per github instructions and added all dependencies either through anaconda or manually installed and provided the path.
The code I used for test r…
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Hello,
Thank you for the amazing tool! I am running build_grn, however, I am getting an error when trying to pickle the object. May you please help me debug the error? I've been able to pickle the …
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#### why
Recent incursion of new players and players from other servers have resulted in the following ideas being strewn about in the thread. Mostly just copypasting the answers to `>>359508778`
…