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hi @lachmann12. I really appreciate this resource , it is truly great help. But apparently I noticed [this]( https://github.com/MaayanLab/archs4/issues/38#issue-2106403213) too and as you may s…
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## Describe the issue
Using the --symbol option the hgnc_id is sometimes filled in and sometimes not for certain transcripts in certain variants, depending on what variants come before. I am able to…
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This is a draft of how to fix it:
#check available updated database
query(ah,'org.Hs.eg.db.sqlite')
human_orgdb
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In reviewing the [Uniprot-to-Ensembl](http://ops2.few.vu.nl/QueryExpander/mappingSet/11) linkset, it was raised:
> ENSG IDs (as given as example) are not included in the linkset. Was this due to the …
stain updated
8 years ago
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E.g. on [`CHEMBL1201631` Compound Report Card](https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL1201631/), there is only one drug mechanism record. However, [http://mychem.info/v1/chem/CHEMBL12…
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Hi Federico, thanks for your app which can really make my work a lot easier!
For the first time I am approaching RNAseq data analysis and I am adapting my data to the documentation workflow. Once I …
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Nearly 5% of transcript IDs in Deep Mind's Alpha Missense data do not match with a transcript ID in the xrefs output of `EnsemblGenesTask`. This may be a consequence of using different versions of Ens…
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余老师您好,我在使用clusterProfiler和bioMart进行Entrez gene ID转Ensembl ID时发现一个问题,即`clusterProfiler bitr()与bioMart getBM()转换得到的gene list不同`
workflow如下,
数据来源:GAD database
- wget -c https://maayanlab.cloud/sta…
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During the last submission, we were unable to add gene information as the validation script found an error in collection_gene.tsv. When we investigated the reason, we found that the file was failing b…
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I receive the error message,
ValueError: Unable to determine gene collection. Please make sure the input dataset specifies either HUGO gene symbols or Entrez gene ID's.
W1_1.var.head()
gene_id…