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Hi ~
I'm run `conditionally independent QTLs` model to find multiple independent signals of a eGene.
it ran successfully and got the result. But when I checked the number of eGene, I found that on…
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Hi there,
I am trying to run the mapping of cis eQTL using an interaction term and am running in the following error:
```bash
>>> cis.map_nominal(genotype_df, variant_df,
... p…
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- [X] I have searched **[the docs](https://greene-lab.gitbook.io/lab-website-template-docs)**, [existing issues](https://github.com/greenelab/lab-website-template/issues), and [existing di…
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Hi,
I tried running finemap with the --intercept option and received the following error. See full log below.
Can you please tell me how I should resolve this?
thanks,
Ruth
```
===========…
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I'm also removing underscores from all SABs Ive ingested. This will eliminate the need for writing in exceptions in the `codeReplacements` function which currently replaces underscores with spaces:
…
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Hi, if I understand correctly, missing values are imputed using the mean. In my data, the same genes are not measured for each person, so I have a lot of missing data. I do not want to impute this dat…
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Hi,
I was wondering why there are discrepancies between summary stats in the master branch and the old branch (manuscript_plot_updates )?
As an example, summary stats here `ftp://ftp.ebi.ac.uk/pub…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/dunstone-a/QTLExperiment
Confirm the following by…
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In the example below, you can see that "Brain (DLPFC)" appears 4 times, with 2 different spellings, in the colocalisation section of the study-locus page. It should appear in only one column.
The way…
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Hi Zhijie,
I noticed that your work on GLUE mentioned eQTL and Hi-C. Would you be so kind as to tell me where I can find your script?
Thank you very much.
Dan