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I am downloading MetScale for the first time and am running into issues with the download of the Singularity images when I run python download_offline_files.py --workflow all
**Error message**
Dow…
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![p750_reverse_kmer](https://cloud.githubusercontent.com/assets/25803304/25551959/e8f78470-2c5b-11e7-8042-4f5da95b5c5b.png)
![p750_forward_kmer](https://cloud.githubusercontent.com/assets/25803304/25…
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**Describe the bug**
I have a collection of paired fastq.gz datasets, I wanted to run a fastqc on one of the forward reads so I dragged it into the tool panel and executed fastqc. Fastqc job ended up…
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Hello -
FastqQC is a very useful tool we've used for years. I know you have the ZIP version to distribute the code and dependencies; however, it would be helpful on our side if FASTQ could be buil…
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**Describe the bug**
Masthead covers up the top of all panels after drilling into FastQC report
* activity bar doesn't impact
* themes do not impact
* new in 23.1 pre-release
**Galaxy Version a…
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when I run snakemake, I got this bug: please help
[Wed Aug 24 09:29:59 2022]
rule fastqc_raw:
input: data/Metagenomic2020/P92_R2.fastq.gz
output: results/report/fastqc/raw/P92_R2_fastqc…
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Hello I am trying to run FastQC, but I have been receiving an error where file has failed to process. I have included the output below.
${PROG}/fastqc_v0.12.1/FastQC/fastqc AG2_R2_001.fastq.gz --e…
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### Description of the bug
The sarek pipeline repeatedly errors out at the GATK MarkDuplicates step with the message:
"Error occurred during initialization of VM
Could not reserve enough space …
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Currently, in the "Working with the FastQC text output" of the 02 Assessing Read Quality episode works with the text output of fastqc. This lesson is quite long, and I think most people work with fast…
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Hi,
I find threads doesn't work under the following case and I must set -j > 30 to run this command:
![image](https://github.com/snakemake/snakemake/assets/29703450/dea04ba4-a5c9-4301-a573-8a1b74278…