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It looks like the submodule gatb-minia-pipeline has an invalid commit reference when doing
git clone --recursive https://github.com/kehrlab/PopIns2.git
fatal: reference is not a tree: 08e3bcd44b…
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Hello all,
I am using phyluce_probe_slice_sequence_from_genomes function to extract UCE loci from some scaffolds assembled (using a GATB-minia and Redundans pipeline) from low coverage whole gen…
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...I was discussing with Zam that the index is more like a binary file, not supposed for users to view. However, the save and load functions in pandora transform it in a text format. We also have 1 km…
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Hello,
I previously ran DiscoSnp (reference free) with _c 3, k31, b0, no low complexity_ successfully, but the genotyping rate is very low 0.036 after filtering. I tried changing to _k51 and b1_ to…
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Hello :)
Thanks to maintain Simka!
Is it possible to obtain the k-mers table counts for each sample analyzed with Simka, to then use it in R to calculate alfa diversity metrics?
Thanks,
L
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hello,
i'm trying your software to see memory consumption of it for a metagenomics dataset i have, the problem is that i can't use bcalm to generate unitig for it(https://github.com/GATB/bcalm/issu…
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Please provide a docker container for this nice software!
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Hi, I'm just trying to compile, but I get error related to gatb. Any way around this?
```
make
[ 0%] Built target H5detect
[ 0%] Built target H5make_libsettings
[ 68%] Built target hdf5
[ 68%…
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Hi
I am working on developing SNPs for radseq data and trying to use DiscoSnpRad to find SNPs and used the following code;
run_discoSnpRad.sh -r a_fof.txt -S rconnector-v1.2.0-Source
The absolute …
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张老师您好：
我在mafft多序列比对完成后按照教程进入macse进行结果优化，但是一直出现下列报错：
log文件显示如下
`gatB_mafft.fas --- …