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the author's [instructions on github](https://github.com/zanglab/SICER2#adding-your-own-species):
> To add a new species, the user has to edit the SICER2/sicer/lib/GenomeData.py file directly. To d…
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Dear Author,
Thank you for developing such a perfect model like C.Origami. It's a great work, but I have encountered some difficulties.
First, I have DNA sequence information from other species,…
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Hello,
Can you apply this software to pigs?
Lv Jiayu
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when I load the saved project and then use the addMotifAnnotations function, it shows this error :
Error in eval(parse(text = genome)): object 'BSgenome.Mmusculus.UCSC.mm10' not found
Traceback:…
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Hey there,
I've been meaning to check out this tool for a while, and finally got around to running the test data through. We had issues due the python and perl binaries being specified in different…
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Has anyone successfully run star-fusion on drosophila samples? I've tried to create the requisite genomes both with the current singularity star fusion release (1.12) and the older 1.9 versions using…
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Based on some discussion at https://github.com/lh3/seqtk/issues/62 I thought it could be useful to have a `-v` (invert) option for `samtools faidx` which would return the FASTA of the sequences **not*…
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Hi,
I was hoping to get some help as while I have been able to process most of my samples (3 of 4) from a recent HiC run using HiC-Pro, for one sample I am receiving the following error detailed i…
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~/software/RNAEditingIndexer$ docker run -u $(id -u ${gplab}):$(id -g ${gplab})
-v /the_path/to_your_bams:/home/gplab/software/RNAEditingIndexer/Aligned.out_sort.bam:ro
-v /the_path/to_your_outp…
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https://genomicsstandardsconsortium.github.io/mixs/0016012/
_A collection of terms appropriate when collecting samples and sequencing samples obtained from the uppermost layer of Earth's crust,…