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## Check Documentation
## Description of the bug
I am trying to run rnaseq pipeline with singularity on HPC and it fails stright after running. I am not sure why it tries to run docker if I spec…
ghost updated
2 years ago
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## Check Documentation
I have checked the following places for your error:
- [x] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [x] [nf-core/dualrnaseq pipelin…
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I'm using nf-core/sarek v2.6.1 with Nextflow-v20.10.0
I tried to change values of java memory for markdup without success.
`nextflow run nf-core/sarek -c ../genotoul_1.config --input input.tsv …
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## Bug report
### Expected behavior and actual behavior
Whenever I try to run any pipeline (e.g. nf-core ones) with Docker or Singularity it does not use the container to run the pipeline. Henc…
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Hello,
I got this error message:
```
executor > slurm (376)
[82/2114a9] process > get_software_versions [100%] 1 of 1 ✔
[5d/c7b324] process > makeBowtie2Index (GCF_00325... [100%] 1 of …
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## Check Documentation
I have checked the following places for your error:
- [x] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [x] [nf-core/mag pipeline docum…
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Sorry if it is redondant to issue #66 , but it felt like it was a different problem.
I have ran the hi-c pipeline with no issue with a maize sample and a maize genome, but I encountered this issue …
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Firstly, thank you for all the effort in putting this pipeline together.
I'm running into an issue where I can't get the workflow to execute on AWS Batch. I've tried launching it from a t2.large an…
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This can't be a memory issue as I have 64GB on my machine and only adding 2 x 200 viral genomes
## Description of the bug
odgibuild chokes but running the following completes succesfully:
```bash…
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I am sorry to be writing 2 out of two bug reports for the pipeline in just a few days, but I seem to be good at breaking things :/
## Check Documentation
I have checked the following places for…