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I have installed InterProScan version 5.59-91.0 using conda and run it on a cluster. The tool however skips analysis of some of the protein sequences reportedly due to an unexpected format:
```
in…
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Hi jtamames
Could you help with this issue, I don't understand what is happening, the database is well installed, I have 128 cores with 256 GB RAM in a cluster to run this pipeline (SqueezeMeta v1.…
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Hello,
I am using funannotate 1.8.13 and am trying to integrate my interproscan results with my gff file.
funannotate annotate --gff ../GFFfiles/S1_mod.gff --fasta ../Genomefiles/S1.fasta \
-s …
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Dear Professor:
I found through literature review that HaMStR can identify orthologous clusters from genomes or transcriptomes(http://www.deep-phylogeny.org/hamstr/) by performed with strict p…
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Hi @AstrobioMike,
I have been loving GToTree! I was just wondering if you have any plans to allow HMMER searching of target genomes using something other than PFam accessions (e.g. custom HMM prof…
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I run the "~/software/interproscan-5.52-86.0/interproscan.sh -i hap1_protein.fasfa -b hap1.iprscan -iprlookup -pa -f tsv -dp --cpu 20"
its error
03/10/2022 08:24:19:301 Welcome to InterPro…
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# General Information
Data and code directory on the server:
`/mnt/data/asis/prot-scriber`
_Note_ that in the following all relative paths are to be rooted in this directory.
R-Code for evalua…
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Hi - running without assembly as I did this externally. Running into an error at step 10. Syslog, script, and file are attached. Any idea what is causing this error? Thanks!
Syslog: [syslog.zip](ht…
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I wrote a package to run the Viterbi hmm-profile alignment algorithm on hmmer3 profiles. The package uses pyhmmer to parse the hmm files and get numpy arrays from the values. https://github.com/seanrj…
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Hi. Hope you are doing great!., could you help me please? what does this means? where should i install HMMER3? sorry for being this dumb, i really doesnt know about this kind of things. I just instal…