-
Hi there,
Thanks for making this tool - there's definitely a need for a consistent framework for calling pseudogenes across disparate prokaryotes, and this seems like a great method to do that.
…
-
Hi,
when I try to build Sambamba, I get
[4/34] ldc2 -I=sambamba.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -makedeps=sambamba.p/…
-
Hi,
The tool is great. Can we use for Illumina paired end/Iontorrent PGM data as well. It will be helpful if it is extended to this two second generation platform starting from basecalled fastq reads…
-
When working with dual combined barcode reads, pheniqs should be used for demultiplexing instead of qiime. Implement this into the pipeline.
-
For fungi, it's not been uncommon to sequence with IonTorrent. It should be fairly straight-forward to add support for this, just changing settings in DADA2 according to their recommendations for IonT…
-
On the core-updates-frozen branch of GNU Guix we cannot build Sambamba 0.8.1.
This is the build output:
```
python3 ./gen_ldc_version_info.py /gnu/store/7q260qa0aj3lj1wm7pkbr23af9wip1dr-ldc-1.…
-
Hi,
I am trying to run CNVfilteR on IonTorrent data. The .vcf is the output of Ion software so I cannot do so much on it. Reading the manual I've found that is possible to adapt the function to whate…
-
Many thanks for providing CNVpytor.
We consider CNVpytor for analyzing shallow sequencing data obtained with nanopore sequencers produced by Oxford Nanopore Technologies.
I read in your manuscript (…
-
Hello!
I have two questions about TrimGalore. I usually use TrimGalore for RNA-seq, ChIP-seq, GRO-seq and eCLIP-seq.
When TrimGalore detects adapter sequence automatically, for example, there ar…
-
**Describe the issue**
Hello, I would like to add colorful tracks underneath top 10 genes. Can I modify the pathway tracks to 1) show how the sample was sequenced (Illumina vs. IonTorrent vs. Both)…