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We need to align on the training, validation and test sets used across candidate models for consistency and proper validation.
In addition, since our validation technique requires multiple element …
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Hello, I just used isocor2 to correct my mass distribution vector data. I noticed that in the result, there are areas for isotopologues that were not detected before correction, like this one:
…
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**Describe the bug**
I'm still verry new to this so I might be doing somthing dumb, but when I run rapidtide using the docker container's latest version, it seems to be lauching but it quickly stops …
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Hi,
I am facing an error that I haven't been able to resolve when running this code chunk:
spe
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[PGFinder 2.0.pptx](https://github.com/Mesnage-Org/pgfinder/files/14169975/PGFinder.2.0.pptx)
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I utilized MSFragger-PD for performing an open search on a set of 12 files, totaling 23 GB in size. Remarkably, the close search of these identical files using SEQUESTA completes within approximately …
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**Describe the bug**
I think that two of the adduct correction masses in `known_adducts_table.csv` are one electron mass different from what they should be. A table of the adducts and masses in quest…
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Hello,
I am trying to use CAMERA to detect C13 labeled compounds in my data following the manual on the [bioconductor page](https://www.bioconductor.org/packages/release/bioc/vignettes/CAMERA/inst/…
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Hey!
I am working with TMT-16 data, trying to perform isotope purity corrections on the PSM.tsv files from FragPipe and re-running them through the TMT-Integrator portion of the pipeline. I was won…
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Hi,
In [Spillover correction](https://bodenmillergroup.github.io/IMCDataAnalysis/spillover-correction.html) when I run the following command
`plotSpillmat(sce, isotope_list = isotope_list)`
I g…