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I am working with a student who is having this issue with their execution of nextflow
```
executor > local (3)
[30/a60146] process > assembly:porechop (H37Rv.1) [100%] 1 of 1 ✔
[24/79a658] pr…
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The REST endpoint for listing running jobs is /admin/system/jobs.
I don't think that this is used by any piece in the client.
My test machine is seb-kbase-devel.mcs.anl.gov.
The plan is to reproduc…
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Here I want to keep track of some ideas we've thought of and, in some cases, discussed to improve kevlar's memory consumption and speed. I'll link to relevant issue threads and pull requests as they c…
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Hi @gjeunen,
I would like to extract the amplicon regions from the same database using the insilico_pcr and pga functions for a large number of primers. I tried setting up a SLURM job to do this, …
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Dear Team,
I ran metaspades with k21 and with an option just for assembly. I am using spades version 3.13.
While starting the kmer counting its throwing an error with code -11. I have gone throug…
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Hello- thanks for developing this very intriguing software.
I'm currently exploring its use for several resequenced genomes (~1GB each). I'm curious what expected runtimes are? Currently, I am u…
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Hi all,
I'm trying to assemble a transcriptome from pair-end read files (fastq) using rnaSPAdes 3.11.
**Here is the .bat file I used:**
#PBS -N rnaspades_metaT
#PBS -l walltime=26:00:00
…
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Hi
We are working on analysis of Bioinformatics tools (related to Kmer counting) and Gerbil is one of them. We have gone through **readme** file and it is very helpful. As we are doing analysis so…
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The result of abundance-dist.py is like below
abundance,count,cumulative,cumulative_fraction
0,0,0,0.0
**1**,6694694,6694694,0.48
**2**,906389,7601083,0.545
**3**,592628,8193711,0.588
**4**,5243…
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While `count(kmer)` is used extensively throughout the test suite, there are no explicit tests for the functionality of `count` itself on the counting hash or hashbits objects.
@ctb @mr-c