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for
```
~/sratoolkit.2.8.1-3-ubuntu64/bin/fastq-dump.2.8.1-3 -A SRR1929297 -Z | syrah -k 31 | sourmash compute - -o SRR1929297_syrah.sig
```
```
syrah!
reading sequences and outputting soli…
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## Description
Replace the uses of `Eigen::SparseMatrix` (e.g., in CSR multiply) with more efficient custom code. As an example, @blackwer wrote faster code than Eigen for a project we did here on…
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I am using the following command (after making the input file as instructed) and am ending up with an empty output file. Any ideas? Installation went well and I can run 'fsm-lite -h' without issue.
…
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Hi, I'm getting an error in the multiqc step of the workflow when running it with the ecoli test dataset.
Here's a snippet of the error:
```
Error in rule multiqc:
jobid: 1
input: re…
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Hi @mourisl,
It was exciting to meet you at CSHL and I appreciate that you took some time to implement the feature we discussed.
I gave it a try this morning, and saving the trusted k-mers file …
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Hi, Dr Zhao:
Does bindash have option to filter out low coverage or low quality Kmers in fastq file?
I believe these Kmers will bias distance estimation
Many thanks
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The `_shred` method returns a ordered list of kmer IDs. Assert two subsequent kmers in the list are neighborly (share a k-1 mer in common) or else do not increment that edge (it mustn't exist)
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Hello SchulzLab,
I tried to run ORNA, but came out with the following errors:
```
(tsm-py3) tanshiming@S620100019205:~/Documents/CaoBin/October-2018/trimmed_duk_kmer31$ ORNA -pair1 /home/tanshi…
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Hello, PhenotypeSeeker developing team,
I ran the continuous phenotype file for PhenotypeSeeker. However, the following error occurred. Could you please help me solve this problem? Thank you for y…
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I see two places where sintax would need a random seed:
1. when a subset of kmers are randomly sampled from the query sequence.
2. when these kmers match equally well to more than one sequence in …