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Going in the same direction some composite peak in metabolic profile also requires manual zones creation that are then assigned to different atoms.
![image](https://user-images.githubusercontent.com…
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In order to run METABOLIC-C I am using the flags -in-gn and -r. According to the instructions, I need to provide the path to the paired-end reads. I tested the command: 1) providing a path to the file…
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Add checks to make sure functions defined in YAML are found in the library, and all parameter values are provided.
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Dear METABOLIC support team,
I now don't have the problem with the conda environment, indicated from the error and log file. For the reason, I don't know, as I didn't change anything with the modul…
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Please provide as much information as you can:
* **Suggested term label:**
positive regulation of reactive nitrogen species metabolic process
* **Definition (free text)**
Any process that act…
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### Prefix
biocyc
### Explanation
E.g. this URI bioregistry.io/biocyc:PWY-7227 resolves to an eror page (not found), but you can continue on that page, search by PWY-7227, and find this page: https…
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Hello:
I ran metabolic using the test file and it worked fine, but when I replaced the data with my own metagenomic data, bowtie2 reported an error. The problem seems to be reading the reads file. He…
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Dear METABOLIC support team,
Is it possible for me to generate the **species** level MN-score_results.txt based on the METABOLIC-C.pl command line below? The I want to plot the species level MN-sco…
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I am interested in downloading metabolic enzymes from pathways. For example in the omega3 senescence pathway (https://www.wikipathways.org/pathways/WP5424.html) there are various genes that are not di…
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Hi,
I am currently trying to implement the metaGEM pipeline for the assembly and metabolic reconstruction of eukaryotic (particularly fungal) genomes. I was wondering if EukRep has been integrated …