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Related to #228, opening a new bug since I can't reopen the old one and this is a new example.
We are still seeing failures in gapfilling for Archaea with version 1.3.1. I attached an example from…
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* **GO term ID and label for which you request a new superclass**
membrane lipid biosynthetic process (GO:0046467)
* **New superclass (parent) suggested**
Add parent
membrane biogenesis GO:…
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## Short description of the problem
anvi-run-kegg-kofams terminated prematurely after producing the hmm.table file
## anvi'o version
Anvi'o .......................................: marie (v8)
…
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Hi James,
I'm trying to compare draft reconstructions of genome scale models for closely related strains of a species. Does sbml-diff have a functionality to only print the changes (maybe with a re…
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I have been using the drag and drop feature on the SBML validator. For the past 2 days it seems it uploads, then returns a message that no file was provided. I have also tried it using the choose fil…
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Hello @vvvieira, @jorgemlferreira and the MEWpy team,
First, I'd like to express my appreciation for the tool your group has developed for in-silico metabolic modeling and engineering. It appears …
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We talked about this already, but I'd like to take action and update the Datastore where appropriate.
There are a number of `gene_models_main` GFFs that have the **Name** attribute starting with _g…
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Hi,
I am trying to (correctly) install cobra, so far unsuccessfully, and I would like to ask for some advice. When running InitCobraToolbox the initialization does not result in any error messages, …
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I am trying to predict interactions between microbes using the simulatePairwiseInteractions function with my models created through CarveMe.
I modified the 'HighFiberDiet_Oxygen' condition provided …
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Our model
http://noctua.geneontology.org/workbench/noctua-visual-pathway-editor/?model_id=gomodel%3A66187e4700001781
has
dicer (dcr1) provides input for argonaut (ago1)
but in the gocam-vi…