-
@percyfal looks like something has happened to the latest snakemake release. Currently the aMeta testrun fails with strange error, it was not the case two weeks ago:
```
(aMeta) nikolay@dell:~/WA…
-
We have previously discussed adding metagenomics compatibility by running fly in meta mode and doing genome binning.
-
Email from Dail:
... we continue to believe that it is essential to link a GB# to these "uncultured" tips. The GB#s are already linked in SILVA so this should (hopefully) be straight forward.
JAR:
S…
-
@rob-knight suggested: we should definitely do some blooming taxa analysis as per the Shade paper and maybe encourage Ashley to do that.
Ashley Shade is at Michigan State.
-
Hell Dashing2 developer,
Dashing can be use for genome derelication in nt format but I am wondering wither it is an option to have it also work for amino acid sequences (all gene of a genome in ami…
-
Hello Benjamin,
I have two questions for you regarding the prevalence function in Decontam at ASV level.
QUESTION 1:
I assume that the control samples should be the same (resemble each other …
-
Hi all,
The read_clustering step failed for whole operons (16S-ITS-23S, ~4.1k mean read length).
The whole nextflow pipeline ran through without errors (on a Mac M1) with test fastq files `mock4…
-
I found several compute nodes stuck with these kinds of message in the syslog:
```
[Wed May 12 10:23:20 2021] mothur[890441]: segfault at 2047c70116 ip 0000000000806cf8 sp 00007ffed82d5870 error 4…
-
Hello,
We am looking to contribute a new classifier to the Qiime project. We
recently released Quikr (https://github.com/EESI/quikr,
http://bioinformatics.oxfordjournals.org/content/29/17/2096), and
…
ghost updated
11 years ago
-
It has historically been common to simplify the depiction of an entire gene, operon, or gene cluster as a single glyph that is equivalent in form to that of the current SBOL CDS glyph.
![image](https…