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Dear Armando,
Thanks for GONE. I ran it successfully with my data first time but then I saw your comment about sex chromosomes and after removing the sex chromosome from my input file. It is showing …
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Hi,
thanks for this great package! I am trying to use SAFE for the annotation of metadata on a low-dimensional graph representation of microbiome abundance information (similar to: https://genomebi…
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I would like to inquire if it is appropriate to merge several samples from different studies (different extraction methods and sequencing depth) into one input count table for mdine analysis after no…
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Hi there!
I ran into an issue while trying to run EukCC via singularity.
I pulled the image and downloaded the database (tried both versions 1.1 and 1.2 with the same result):
```
wget http:/…
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Hi,
First of all, thanks for creating this tool. It seems very neat for crunching down picrust2 output.
I am trying to run `pathway_errorbar` function but getting the following error:
```
Er…
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Dear Developer,
Firstly, thank you for this fantastic R package. I am working with low microbial biomass samples from the nasopharynx. We are using whole metagenomic sequencing data to characterize…
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Hi developer,
I am using SortMeRNA to remove rRNA from my metatranscriptome data, and while I expected most rRNA reads to be depleted. The cleaned reads contain 25,721,937 R1 and 25,721,937 R2 reads…
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Hi, I noticed that in function StatKOAttributes, using the adjusted p-value from Wilcoxon rank-sum test or t-test to calculated Z-score of every KO. I wonder what if I used p-value generated from othe…
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尊敬的老师,您好~
我使用您开发的The metabolome-microbiome-metadata correlation analysis platform (3MCor)
上传数据后:单独l1的分析可以做出来,单独的l2分析也有结果,但是单独l3分析一直显示正在运行。
不知道是否数据在哪些方面不符合分析要求?
麻烦老师您啦~
祝好
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[InStrain enables population genomic analysis from metagenomic data and rigorous detection of identical microbial strains](https://www.biorxiv.org/content/10.1101/2020.01.22.915579v1)
Coexisting mi…