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First of all, thank you for providing such a great tool!
From my understanding, ambient RNA correction should be done before any operation that could potentially affect the cells, specifically on …
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- match current nuclear subtype or mito subtype pattern, results in TSV (DOSDP query)
- delete existing logical definitions
- generate from TSV the new logical definitions with the correct pattern …
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* **PTHR ID & PTN node:**
GO:0035965 | cardiolipin acyl-chain remodeling | IBA with PTN000862575 , S000003342 | GO_REF:0000033
* **Sequences with problematic annotation (ID + gene/protein na…
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I noticed that the pipeline now has new mitochondrial read alignments. Do these alignments happen before the alignment to the nuclear genome, do they happen in parallel to the alignment for the nucle…
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Mutect2 has a mitochondrial mode that deals with issues specific to mitochondrial variant calling, discussed here: https://github.com/broadinstitute/gatk-docs/blob/master/blog-2012-to-2019/2019-03-05-…
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I wonder if you are interested in developing sketches for mitochondrial or plastic genomes?
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#### Current behavior:
27 genes are discovered to be uncorrelated with their corresponding reactions in `Carnitine shuttle`.
| Gene | UniProtID | Reaction | GPR | Correlation| Manually check…
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### Project title: Comparative analysis of camel mitochondrial genomes ###
#### The aims of this project are to: ####
- annotate the mitochondrial genome of Arabian camel
- the mitochondr…
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Dear author,
Thanks and cheers for developing this package!
I have the question as to how to use the package to download complete mitochondrial genomes from the NCBI. This is because I am going …
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Hello,
Thank you for creating this great tool. I have successfully run read2tree using marker genes downloaded from OMA browser and my own data, which seems really great.
However, I found some pro…