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Hi,
Thank you for your tools. I am trying to make it work. I have encountered some problems.
1) There are many reference files in RefSeq . I installed HP_RNAME=hg38 for the first time later, and…
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### Description of the bug
We have run Sarek pipeline v3.1.2 on 3 WGS batches, including around 2500 samples, using the GATK.GRCh38 reference genome from iGenomes and mostly default parameters (see t…
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Hi there,
I've been working with some members of our computational research support team and we've all had difficulties getting the full database to download.
This was what I did as a first attem…
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Hello,
I am working with human mtDNA. When I assemble it the circularized version starts from the random positions (like 6789, 7345 and so on splitting the mtDNA in the middle) with respect to the …
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Hi developer,
I am using SortMeRNA to remove rRNA from my metatranscriptome data, and while I expected most rRNA reads to be depleted. The cleaned reads contain 25,721,937 R1 and 25,721,937 R2 reads…
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**Is your feature request related to a problem? Please describe.**
I would like to be able to quickly determine what research article I should reference simply from looking at the output of `datasets…
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hello:
After I finish CallMolecularConsensusReads, when I use SamToFastq, the following error appears, indicating that there is an illegal mate state: A:10000006/A, could you tell me the reason? …
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The assembly finished but I got this message:
== ERRORs:
* system call for: "['/Volumes/ExternalHD500/SPAdes-3.13.0-Darwin/bin/spades-core', '/Volumes/ExternalHD500/spades_K21_25_33_55_C1/K55/con…
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Hello!
Thank you for this brilliant tool.
I've been using it for an application in which syntenies inferred using `mummer`'s `nucmer` (so, at the DNA-level) were partial, when compared with `mumme…
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Greetings,
I getting said error when running the tree command, it also seems the process does not complete because of this. I'm not able to determine what is causing the error. I checked the COX2_p…