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Hi, according to the documentation, the `sub-001_T1w_label-lesion_roi.nii.gz` has been put in the bids folder then run the `qsiprerp`.
But I wonder how to get the lesion mask of MNI space? The output…
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The older mni.cortical.statistics tool could write out a file with a header, which brain-view, and other MNI vertstat\* programs could understand.
It would be nice if RMINC could save in that format …
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https://github.com/FCP-INDI/C-PAC/blob/63c66c3b1d5e3f662ce2ffb521598364805156e4/CPAC/pipeline/cpac_pipeline.py#L2434
When writing functional data to MNI space, if a linear anat-MNI transform was ca…
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Note to self: open an issue that handles when there is a T2w available
_Originally posted by @mattcieslak in https://github.com/PennLINC/qsirecon/pull/49#discussion_r1717183969_
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tsalo updated
3 months ago
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Dear CVRmap developers,
We collected some CO2-challenged BOLD images for CVR, and processed them with FMRIPrep with --use-aroma. When trying to run CVRmap, the following error was encountered.
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Bonjour,
I used Vol2brain to detect white matter lesion/abnormalities in a patient. This was well detected.
When the mni_tissue label 8 ("lesion") is overlayed on the mni_t1 image (left part of t…
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Steps to Reproduce:
Follow steps 1-3 on the following page:
https://github.com/thm-mni-ii/JooMDD/blob/master/docu/InstallationGuide.md
Expected:
eJSL plugin appears in Available Software dialog
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boldc updated
2 years ago
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Visual QC in standard space can be misleading as it shows non-linear artifacts instead of acquisition artifacts or anatomical anomalies.
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- [x] show_retinotopy_flatmap.py
- [x] show_retinotopy_webgl.py
- [ ] show_mni_flatmap.py
- [ ] show_mni_webgl.py
- [x] show_config.py (add to __repr__ for cortex module?)