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Downloader:
- not controversial, we can add one instance to the scene that has obj and swc, select all instances and check that the archive has the required data.
Uploader:
- To follow up, a good str…
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Just to keep track of some ideas:
1. When just trying to find matches, it might be worth not computing a precise/final similarity score for pairs of neurons that clearly aren't the same thing. Minima…
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With the default scoring matrix, distances greater than 40um are essential treated the same with only minor differences based on vectors. We could leverage this to cut down the time spent in the neare…
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This would make it easier to color neurons (perhaps also add to the same legend group) in some sort of grouping (e.g. from NBLAST via scipy's `fcluster`):
```
plot3d(nl, groups=[0,0,0,1,2,1,1,2,2]…
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key points for the design:
functionalities:
- the user will have to upload an swc file
- the user will have to select a template to be used from a dropdown configurable list (robbie will provide this…
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I found an error on the "Basics of Particle Image Velocimetry (PIV)" page, as shown in the code attached. I guess that is because the program runs every time people open the page, and the picture was …
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Greetings, can you please help with this issue?
navis version: 0.5.2
Repro:
```
import flybrains
import fafbseg
import navis
flybrains.download_jefferislab_transforms()
flybrains.downloa…
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Hi @jefferis et al. Could you please generate a Zenodo DOI for `nat.nblast`?
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We have a few examples where the current process is causing the graph to be overly complex
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`navis.nblast` fails in the notebook but works fine from console. I set all the settings as advised in : https://github.com/schlegelp/navis/issues/17#issuecomment-762123326
Following the steps from…