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When trying to download the database (human miRBase) I use the populate command but it only tells me no species have been installed.
Am I doing something wrong?
The command:
populate -db /opt/…
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Current SBOL RNA-related glyphs (i) do not capture the range of RNA functions and (ii) where they do exist are not expressive enough to precisely annotate the RNA function. A new set of glyphs that mo…
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Key points for introduction:
- What are genome annotations? What type of features are included in genome annotations (protein-coding genes, pseudogenes, RNAs etc)? What sorts of things do biologists …
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Example: a [possible mRNA](http://rnacentral.org/rna/URS00002CC6BB/90371) (resolvase) matches Pfam PF00589.20.
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Please provide as much information as you can:
* **Suggested term label:**
cis-acting lncRNA mediated co-transcriptional gene silencing
* **Definition (free text)**
see below
* **Par…
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Remove the "SELEX", "WGS", and the empty artifact. Check how many records are in SELEX and WGS first before removing and post this info here (with a date/timestamp when you retrieved these record…
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For input:
1. I have got a GFF file from PlasmoDB. "PlasmoDB-66_PvivaxP01.gff"
2. I converted it to GTF file using agat `agat_convert_sp_gff2gtf.pl --gff ../PlasmoDB-66_PvivaxP01.gff -o PlasmoDB-66_…
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**SO term name and accession**
gene_with_edited_transcript (SO:0000548)
**Current parent term name and accession**
protein_coding_gene (SO:0001217)
**Suggested new parent term name and accessi…
sjm41 updated
2 years ago
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Hi @AntonPetrov
As you know we recently installed R2DT.
We found that quite a few ncRNAs unexpectedly got R2Dt predictions.
On inspection these features were actually in the ncRNAs on the …
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##### Project link
https://github.com/orgs/geneontology/projects/TBD
##### Project description
Currently, the only information that can be carried by the GPI format is whether or not an identif…