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http://noctua.geneontology.org/editor/graph/gomodel:5b91dbd100000065
In this model, I'm trying to state the MF occurs_in the GO:0005775 vacuolar lumen as an an extension (in Protein2GO under PMID:…
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https://github.com/geneontology/noctua-visual-pathway-editor/pull/35
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The following is the list of tasks for this project:
- [x] cAMP receptor activity not a child of G-protein coupled receptor activity geneontology/go-ontology/issues/13881
- [x] MP cell surface …
ukemi updated
5 years ago
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On the Pathways2GO call May 27, we decided that the imported Reactome models and other imports should not be edited by curators. These models would be house in separate repositories where they would b…
ukemi updated
2 years ago
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As part of the noctua annotation import process at MGI, I have asked @loricorbani to turn off the step in our pipeline that filters 'duplicate' annotations. One reason for this is that all of the anno…
ukemi updated
2 years ago
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Last Friday while browsing models from the legacy data load on development, we noticed that the model for MGI:98297 had a lot of nodes that represented cells and anatomical structures and appeared to …
ukemi updated
4 years ago
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For the MOD imports project, we want to export creation-date and modification-date in the annotation properties field (field 12).
This depends on work being done here:
https://github.com/geneont…
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We have long had comments pointing out that contributor and provider values are strings representing IRIs: https://github.com/geneontology/go-shapes/blob/f5b117b6f12bdffe72595f4409c2d18817709152/shape…
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When we generate complex models, we want to be able to retrieve correct evidence to support inferences or assertions for processes that are far downstream of intitial annotons. This becomes problemati…
ukemi updated
3 years ago
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Will commit example input and output for:
- [x] Reactome
- [x] YeastPathways
Setup some tests that read test input BioPAX and generate data objects similar to (e.g., same reaction count, contai…