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A novel exact pairwise alignment algorithm, namely the wavefront alignment algorithm (WFA) has been proposed recently in September 2020 (big thanks to @dlaehnemann for noting this!):
[Marco-Sola, S…
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Hello,
I'm new to whole genome assembly using ONT reads. I have two questions.
Suppose the consensus sequences identified during the inference are not adapters but are important to the project …
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Hi,
Thank you for a great tool that is so user friendly! I'm wondering where I can find a Snakefile or other information about sample processing. For example, I'm hoping to use the BAM files for oth…
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Dear Developer,
I hope this message finds you well. First and foremost, I would like to extend my sincere gratitude for developing this remarkable software. It has been an invaluable tool in my res…
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I have just run purge_dups using the manual pipeline (so that I could set arguments like '-x map-ont' for minimap2). My input was a nematode genome assembly of 155 Mb and 50x coverage with Oxford Nan…
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This is to capture issues for building the next primate assembly hub.
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Gotta minimize this, Take https://github.com/cirosantilli/cirosantilli.github.io/blob/8cc239760c107dd6f6ee84ec613b23629fce685e/cool-data-embedded-in-the-bitcoin-blockchain.ciro#L868 and remove the `{p…
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### Description of bug
(bio) zhisong@zhisongs-MacBook-Air spades % bin/spades.py -s ../accuvirnew/bad_nano/hiv_50_2k.fastq -o testfasta --isolate
== Error == /Users/zhisong/Desktop/accuvirnew/b…
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Hello,
Are you still looking for data from PCR-barcoded reads? I have whole genome sequence data from Tegeticula (yucca moths, a small insect with a moderately sized genome - ~400GB).
I am inte…
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**Describe the bug**
I use ONNX to release/distribute production models for modified base detection from Oxford Nanopore sequencing data in the [Remora repository](https://github.com/nanoporetech/rem…