-
```
Is the intent that OGMS follow principles of reuse, univocity?
homeostasis is in GO as a process. You're free to contest this, e.g. on the GO
tracker (I think it's a conventional view, and is us…
-
> Would modified mutual exclusivity functions be appropriate to add here? Currently mutual exclusivity is returned based on evidence from studies in the KB but could potential query a user defined dat…
-
Either find or create terms for all HGNC gene locus types that can be used to annotate all genes in HGNC:
- [x] Fragile site https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/301
- [x]…
-
* All Trait and phenotype patterns have a modifier. This may be phenotype, trait or children of these terms.
* Modifier: normal/abnormal has parent class phenotype (?) This replaces deviation(from …
-
The past months we were busy getting a bit more used to implementing and discussing new patterns. Making sure our definitions adhere to standard patterns is getting us 60% of the way to reconciliation…
-
Our web-based, prototype Phenotype Reconciliation Workbench [72] uses string matching and semantic criteria to identify ontology terms for potential alignment. We will refine this tool to improve usab…
-
- [x] Abstract
- [x] Simplify line “In our cells, proteins are constantly being created and are degrading, and are accumulating or interacting to produce the phenotypes that we see at a larger sca…
-
GO are planning to obsolete their 'cell death' term, which is the basis of the 'abnormal cell death' phenotype and increased/decreased children:
https://github.com/geneontology/go-ontology/issues/246…
-
Katie, an undergrad in my lab, has been annotating papers that describe altered growth phenotypes, which led me to start working on this branch of the ontology again.
Currently, OMP has phenotype …
-
To support interoperability, semantic artefacts should be designed based on well-supported patterns whenever relevant and possible. These patterns should be documented and published as a resource for …