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While cutting the February patch releases, the image promoter got rate limited by Fulcio, the sigstore certificate authority (see [this long thread in slack](https://kubernetes.slack.com/archives/CJH2…
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~~Please submit your assignment for week 8.~~
**`README.md` file with commands and answers to questions**
**5/5**
| Exercise | Points Possible | Grade |
| -------- | ------- | ------- |
| C…
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iBioSim Version 2.8.3
Operating system: Mac OS X
Bug reported by: andy.gilbert@utah.edu
Description:
Following the tutorial with version 2.8.3 and when I tried to create a promoter with custom valu…
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It seems that in AptaCluster, you are performing clustering with the entire DNA sequences. In RNA aptamers, the DNA sequences contains T7 promoter which will not appear in RNA aptamer molecules. So I …
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Is there any way to make term lookup case-flexible?
For example, it would be nice if looking up "Promoter" or "PROMOTER" in SO will get you the URI for "promoter" and "cds" will get you the URI "CD…
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As it stands now, this function colors the dots according to the number of features with a detected TSS at each threshold, regardless of whether it is promoter-proximal. I think it would be more intui…
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The proposal has been made to obsolete the precomposed terms under GO:0046019 regulation of transcription from RNA polymerase II]). Few terms are left ; this next list focuses on terms precomposed wit…
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what are details of input.txt? I find there is only a seq in input.txt that you provided, and should I put all promoter and non-promoter seq into input.txt? I am confuse about the point.
Another …
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Hello
The code of line 530-558 in the [06-genomicIntervals.Rmd](https://github.com/compgenomr/book/blob/master/06-genomicIntervals.Rmd) can't run successfully:
```r
# get transcription start s…
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**GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding**
+intersection_of: GO:1990837 ! sequence-specific double-stranded DNA binding
+intersection_of: has_input SO:000…