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> **Background.** Gene expression is mediated by specialized cis-regulatory modules (CRMs), the most prominent of which are called enhancers. Early experiments indicated that enhancers located far fro…
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# Data overlap
## Generate a `data overlap matrix`. Overlapping to the `ATAC-Seq differential accessible regions`
- [x] **ChIP-Seq:** `TRUE` or `FALSE` of there is an overlap between ATAC-Seq an…
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Hello,
Super happy with the database that you have put together. This is an awesome resource for researchers.
So from some experiments in my lab I have a list of DMRs from DNA methylation data and…
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Hi
I am using docker image for analysis. But Makefile is not running in one go, it is stopping after first step.
rsat_user@cde778d90cbd:~/rsat_results$ make -f peak-motifs.mk
Creating the result…
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# PMID:35536002
## Activities and Structure-Function Analysis of Fission Yeast Inositol Pyrophosphate (IPP) Kinase-Pyrophosphatase Asp1 and Its Impact on Regulation of pho1 Gene Expression
Inosi…
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Hi,
met a problem with ChIPseeker recently.
The first one is the region priority problem with "genomicAnnotationPriority"
My question is:
when I use genomicAnnotationPriority = c("3UTR", "…
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**Project:**
Pseudo-WGS variant calling for common cell lines mining ENCODE and Roadmap Epigenomics data Recent progress in sequencing technologies have led to a massive production of epigenetic datas…
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Tracking issue for moving from Google Container Registry to Google Artifact Registry.
Artifact Registry is "The next generation of Container Registry. Store, manage, and secure your build artifacts…
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Hi!
I am currently using the --ref-ld-chr-cts option to perform S-LDSC analysis, and I have a few questions:
1. The output of my analysis only includes the columns Name, Coefficient, Coefficient_s…
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Dear everyone,
When I run the partitioned heritability, there have some errors:
xiangbos-MacBook-Pro:ldsc_mod xiangbo$ python ldsc.py --h2 sleep.sumstats.gz --w-ld-chr /Users/xiangbo/mtag/mtag/lds…