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- [ ] icons for all 20 canonical amino acids and protonation states
- [ ] coevolution
- [ ] salt bridge icon
- [ ] epistasis icon
- [ ] interaction network in protein
Inspiration
![image](h…
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In the file huintaf2-main/data/HuRI-uniprot-mapping.csv
There are many mappings that mapped the ensemble to isoform-2 of a protein, e.g. `ENSG00000072682,O15460-2`
However, in the file `HuRI-mer…
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> http://dx.doi.org/10.1371/journal.pone.0141287
>
> **Motivation:** We introduce a new representation and feature extraction method for biological sequences. Named bio-vectors (BioVec) to refer to…
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Includes Intact, Biogrid and String databases.
The adapter will provide following as node and edge data:
- Edge type: protein-protein interaction
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Variant page feedback points from EMD (from discussion with Carlos):
- [x] Ensembl link at the top of page: is it possible to take the user directly to the variant page instead of the search result…
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Hi,
This is a great work and I would like to have a feature request (or please let me know how to do this if already possible).
Sometimes I do my own alignemnts, and would only like to have the …
gezmi updated
1 month ago
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## Expected Behavior
An output.csv table with a list of each interaction
## Current Behavior
outup.csv table with neither names of proteins or pTM/ipTM scores
## Steps to Reproduce (for bugs)
in…
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## *Repository Creation Request*
1. #### Coordinating Institute: Indian Institute of Technology Kharagpur
2. #### Approved Proposal: [Experimental Biochemistry](https://drive.google.com/file/…
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when multiple small molecule inputs (B, C, D...) predicted with one protein molecule result clashes between small molecules. I assume that they don't consider interactions between small molecules... i…
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In this project, the main key is to find the binding site of the WDR 91 protein. In order to do this, I have decided to delete the ligand from the [8SHJ](https://www.rcsb.org/structure/8SHJ) and decid…