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Project Lead: Carol O'Brien @cobri
Mentors: William F. Broderick @billbrod and Samuel Joseph Haynes @DimmestP
Welcome to OLS-7! This issue will be used to track your project and progress dur…
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Dear neogilab
I have read the paper, the result is very interesting.
Could you provide the Fractions data for me to test the result?
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I am exploring your tool to score a bidirectional signature in my proteomics data. Can singscore handle missing values in the expression matrix? I tried and I am getting NAs in the score output
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@jgockley62 identified inconsistencies in CERAD scores for individuals from the Banner cohort in the original [Banner LFQ proteomics traits file](https://www.synapse.org/#!Synapse:syn9740295) and the …
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Hello, I was trying to cluster mzXML files from https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=88a7dfeeecb74131a6d6bfb7a9db0a46 in WSL:Ubuntu-22.04 but it does not seem to recognize any spectra.…
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Hi PDV developer team,
We have been searching some o-linked enriched glyco-proteomics data using MSFragger. Can we visualize the spectra in PDV? Does PDV handle and show the diagnostic fragment mass…
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Dear Sabrina, @SabrinaRichter
Thanks for your research and your contribution to the single-cell proteomic data. I am very interested in the data mentioned in your article. I am a PhD student and I …
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Dear all,
First congratulations for your work, pClean seems to be a promising tool for proteomics in R.
I'm working with TMT-10 plex data, do you have any suggestion about the parameters, especial…
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Hello! I was reviewing the outstanding docs in the `pkgdown` website and I noticed many functions in the reference page (https://motrpac.github.io/MotrpacBicQC/reference/index.html) could be grouped (…
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The MC2 Center data model does not currently enable assay-specific metadata to be recorded. Adding these models is a critical part of supporting data sharing and reuse. Potential models to add were or…