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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/reactome/ReactomeGraph4R
Confirm the following by…
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### Description of the issue:
Human-GEM reactions, metabolites, and genes are associated to many external identifiers from databases such as KEGG, BiGG, ChEBI, and MetaNetX. However, many association…
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Create a new association class `reaction to participant association`
The fields would be:
- subject (https://w3id.org/biolink/vocab/MolecularActivity)
- predicate: (todo: add has-participant …
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In addition to providing node types and predicates, we should also provide information about the types of node identifiers that the ARA/KP can consume and produce.
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http://japonicusdb.kmr.nz/submit-data
Tab 'curation statistics' https://curation.pombase.org/pombe/stats/annotation
http://japonicusdb.kmr.nz/status/sequencing-status
requires new text (or re…
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### Description of the issue:
The repo offers associations/annotations for reactions (`humanGEMMetAssoc.JSON`) and metabolites (`humanGEMRxnAssoc.JSON`) but there is no such json file for genes. So…
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I got nullPointerException when Kryo deserialization, serialize the data and write into a file, works no exception, but exception is found when deserialize the content from a file.
Kryo version: 5.…
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When attempting to build the jar file for data-export for release 71, I ran into two seperate issues.
**pom.xml** --> 1.1.21-SNAPSHOT had to be changed to 1.1.20-SNAPSHOT since v1.1.21 wasn't avail…
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On the evidence page in the rewrite, can we please create a new data table that displays the Gene2Phenotype evidence data?
**Example GraphQL API query**
[APC and colorectal carcinoma](https://api-…
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Hi, thank you for the ReactomeGSA package, it looks pretty impressive.
I am using it, and although results seem to have sense, I would like to ask you how do you validate them. I just try one pathw…