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When loading these files:
```
external_data/qualitative_gene_expression_data/PMID_33313903_RNAseq_qualitative_expression.txt
external_data/qualitative_gene_expression_data/PMID_33313903_Riboseq_q…
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Hey,
I hope this message finds you well. I am currently working on calculating the Ribosome Association Index (RAI) for a set of ORFs using Riboseq reads. While delving into this process, I came acro…
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Hi I was reading your article and trying to set up a pipeline following the preprocessing steps in your supplementary material
Would you mind sharing with me how you built your genome indexes for b…
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hello Roleren,
recently, I was adding some virus genes in human genome, I did it like add fasta sequence in human fasta and make some simple annotation info at the tail of gtf files, just like…
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Hello
I just started trying ORFik recently but am just a wetlab biologist with a basic level of computational skills. I am still struggling to go through all the steps.
As I have read instruction…
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hi, your tool is wonderful and your tutorials are very detailed. However, I encountered this error when running the T antigen workflow.
In [14]: snaf.JunctionCountMatrixQuery.generate_results(path=…
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The code I run:
df.rfp
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Hi guys - I'm trying to run your software on some Ribo-seq data in developing mouse neocortex. When I generate my own files I end up with an error like so:
```INFO: Program started.
INFO: Reading …
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hello!when is use the command:
> example_cu_barplot
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* ribotricer version:
* Python version:
* Operating System:
### Description
I have tried running the learn-cutoff function to determine the phase score I should be using.
Ribotricer is bein…