-
# Design
In 2025, the multiple species roadmap requires the following policy changes:
1. There MUST be one `obs['organism_ontology_term_id']` per dataset, previously requested in [Handling of mu…
-
On opening Data Dashboard for HTAN BU project get a disconnect within a few seconds
```
2022-11-29T10:15:13.294523+00:00 shinyapps[5806160]: WARNING: [2022-11-29 10:15:13] root - For the attribut…
-
**Describe the bug**
The findall regex either changed in newer versions of Python or this has always been incorrect:
https://github.com/CDPHE-bioinformatics/CDPHE-SARS-CoV-2/blob/f3b93dd3972b137…
-
### A summary and discussion of the 19F NMR fragment screen approach towards the SARS-CoV-2 helicase, Nsp13.
### Current Objectives as of 11th March 2024:
**@TomkUCL:**
- [x] 1. Synthesis…
-
This recombinant seems quite interesting to me because appears, beyond having 22N+59S, to be a mini saltation branch (3/4 AA changes not inherited by donors , apparently).
It involves KS.1.1 and JN.…
-
At the [Biohackathon](https://github.com/virtual-biohackathons/covid-19-bh20), I noticed @bmeldal offering advice on UX issues, and since we have [a good number of these](https://github.com/fnielsen/s…
-
Stuff like:
- [ ] difference between different strains of human virus and their effect on the virus (when known)
- [ ] difference between human and bat virus
- [ ] difference between sars-cov-2 a…
-
Thank you for integrating and opensource the Benckmark dataset.
I noticed that there are some inconsistencies between statistics in the paper and the released data in `benchmarks/CodonBERT/data`. He…
-
R190S is becoming very convergent with 31del lineages. There's at least 10 each separate emergences of this under LB.1 and KP.2.3, and many emerging under KP.3.1.1.
From branch 12 of https://gith…
-
## Tasks
_@victorlin to fill this out_
## Links
- [2021-08-17 take 1](https://github.com/nextstrain/augur/pull/762)
- [2021-08-23 take 2 (moved to ncov)](https://github.com/nextstrain/ncov/p…