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From branch 20 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1+T22930A(S:F456L)
GISAID query: T22930A, T3565, T22926C,-A2543G,-C4455T,-T8862C,-C25658T,-G260A,-A6705G,-…
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**Description**
**Sub-lineage of:** KP.1.1.3 (S:R346T, F456L, K1086R, V1104L)
**Earliest sequence:** 2024-5-21 – Spain, Catalunya
**Most recent sequence:** 2024-6-3 – Canada, Ontario (2 seq)
**Con…
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I have noticed a lineage circulating in Australia that has been sampled in 3 more continents.
For sure it won't be fast but interesting to track S:I844V mutation that should be close the fusion pepti…
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**Description**
**Sub-lineage of:** KP.2.3 (S:∆S31, H146Q, R346T, F456L, V1104L)
**Earliest sequence:** 2024-5-14, USA, Utah — EPI_ISL_19175796
**Most recent sequence:** 2024-6-2, Singapore travele…
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Hi,
I would like to use your curated dataset for further neutralizability prediction.
- processing/hiv_reg/dataset_hiv_reg.xlsx
- processing/hiv_cls/dataset_hiv_cls.xlsx
- processing/cov_cls/dat…
sj584 updated
1 month ago
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When running Artic on a sample with too few reads, resulting in too small coverage, Longshot automatically calculates the maximum coverage as 0, and fails. We're having issues with that in an automati…
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## XBB.1.9* Lineage Tracker
### L455F
- [ ] FL.16 > T22928C(**S:F456L**) > A13913G(ORF1b:N149S), T16029C > G960A(ORF1a:R232H), A2589G(ORF1a:E775G), C2892T(ORF1a:A876V), _rev_T3511C_, T4008A(ORF1…
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From branch 26 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1 > M:L46F (G26660T) > G4162A > S:F456L (T22928C)
GISAID query:G26660T, G4162A ,T22928C,T3565C (26 seqs…
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Title: Genetic Variants of SARS-CoV-2—What Do They Mean?
# General Information
## Please paste a link to the paper or a citation here:
Link: https://jamanetwork.com/journals/jama/fullarticl…
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### Description of the bug
I am recently running the viralrecon 2.6.0 on some sars-cov-2 sequences; I noticed that ivar.tsv output doesn't match with the snpeff. annotated vcf as well as the varian…