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#215 changed the scaled value in charcoal/conf/system.conf.
@ccbaumler is using charcoal trying to run the workflow in this repo: https://github.com/taylorreiter/2022-dominating-set-differential-ab…
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Hello Wei,
Any guidance to install/compiling from source? I have an aarch64 (or ARM) CPU cluster and need to compile from source. None of the binaries works.
Thanks,
Jianshu
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There may be a subtle error in the way sourmash is estimating the Jaccard index. In Theorem 1 of the [Broder paper](http://gatekeeper.dec.com/ftp/pub/dec/SRC/publications/broder/positano-final-wpnums.…
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(this is going to be anecdata for now, because I ran it a month or two back and forgot the details)
in brief, I wanted to play around with data from [Generation of lineage-resolved complete metagen…
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There are a variety of sourmash command-line commands that could use a user experience upgrade.
`sourmash compute` is a model of a good command - when you run `sourmash compute` without any argumen…
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Hello,
Thank you for Shasta.
I have been trying to run an assembly of human genome with nanopore ultra-long reads with a mean coverage of 30X.
According to [#7](https://github.com/chanzucker…
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Related to the use case in #1096: `LinearIndex` could potentially be lazy-loaded: during insertion, take note of the existing file location, and only load the data when required (during iteration, for…
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From private conversations with @luizirber @bluegenes @halexand recently -- scaled signatures are different from MinHash because:
* intended for containment (e.g. vs mash screen, regular minhashes)…
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I'm confused, because I thought that sourmash would automatically subsample a signature with lower scaled value than the db, or if not automatically, at least downsample when I explicitly set the scal…
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ref https://github.com/sourmash-bio/sourmash/issues/1652, you want to be able to sketch certain ksizes/moltypes for certain identifiers only, but on a large scale. how can we best do this?