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Hi,@authors:
I built the Axolotl cisTarget database just following the instruction of Gallus gallus cisTarget [database.](https://github.com/aertslab/create_cisTarget_databases/issues/4)
First…
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Hello,
I noticed that the description of result downloaded from your website mentioned that the z score is T cell dysfunction score. The calculation method of dysfunction score and exclusion score…
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The individual weightings of the genes in the 18-gene signature have been published in a patent filing, which can be found by a Google search on this number: WO2016094377 (Claim 21 a+c and Claim 23).…
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I just wanted to add some information about the addGeneExpressionMatrix and import10xFeatureMatrix functions in case anyone else is running into the same issue I had. The error message I kept getting …
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Dear Developer,
I would like to ask if there is a a way of plotting multiple annotations (Cluster info, cell type, other ) from the metadata to the top of the heat map after doing DE analysis .. Li…
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Hello,
I am trying to perform deconvolution on some spatial data. I have had success running `Giotto::runDWLSDeconv()` previosuly but now I am using a larger signature matrix and it appears that `q…
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尊敬的作者您好!
很感谢您开的这个工具为我提供了帮助与便利,今天我在运行irGSEA.score这个函数的时候发现含多个signature的geneset 会出现报错,如果让geneset只含有一个signature是能够正常运行的.以下是报错内容:
#-----------------------------------------------------------------------…
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Hi Florian,
I tried your tool on my dataset. It worked correctly generating the binary output file. Then I applied your accessory script gopca_extract_signature_matrix.py to get all signatures in tex…
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Dear @huebschm ,
I want to cite your software package _YAPSA_ for my paper. But since the journal of interest requires me to include **the paper or preprint of the software package** into the refer…
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Dear genefu team,
Thank you for providing this great resource! I have a few questions regarding the **preprocessing of test data** for use with genefu, in particular for **PAM50 classification**. I…