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Dear Dev,
I am new user of TRUST4 on single cell TCR seq analysis, regardless, TCR seq could be successfully obtained using bulk RNAseq data.
I wonder, with my 3' 10x genomics GEX data (I have b…
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# Single cell
Single-cell analysis
[https://leequn.github.io/2020-06-19-SingleCell/](https://leequn.github.io/2020-06-19-SingleCell/)
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See https://github.com/hubmapconsortium/hra-workflows-runner/blob/main/crosswalking-tables/popv.csv#L88
See:
| Organ_ID | Annotation_Label | Annotation_Label_ID | CL_Label | CL_ID | CL_Match |
…
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Thank you for bringing such a convenient tool for single cell analysis, but I'm having some problems with the actual use of it, I'm getting an error when I try to convert the BPcells object read from …
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I've written this a few times in the past, but I can't say this often enough: Thank you for sharing your excellent analysis software with the community!
I'm writing to inquire about the possibility…
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Hi Mflamand,
I'm running the scDART-seq data using Bullseye's pipeline, and I have some confusion: How do I get the matrix of cells and sites when there is no barcode information in the final result …
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In #2 @hkhawar applied whitening to try to correct for batch effects. This issue will track the experiment/analysis of applying Harmony to the same DMSO profiles in #2
@sMyn42 will apply Harmony t…
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- [x] [Single-cell transcriptomic atlas reveals increased regeneration in diseased human inner ear balance organs (nih.gov)](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11156867/pdf/41467_2024_Ar…
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Hello,I'm trying to create the chicken's cistarget database for my single-cell research analysis, and already creating the GRCg6a.regions_vs_motifs.rankings.feather throught EPD's bed and v10_clust mo…
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### If you are filing this issue based on a specific GitHub Discussion, please link to the relevant Discussion.
#292
### Describe the goals of the changes to the analysis module.
Now that we have …