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**Summary**
Provide a new node type that allows execution of snakemake rules. pyiron/ironflow would provide a thin interface to make snakemake rules appearing as native pyiron objects.
**Detaile…
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Quick question/suggestion: is there a way to install hisat-3n via conda or plans to make a hisat-3n conda recipe? Would be very helpful for integrating into Snakemake alignment workflows
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Change pipeline structure according to snakemake workflows
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Hi,
Great to see the classic `WGCNA` implemented for single-cell/spatial datasets.
Was wondering if you had any plans to upload to `conda` for package installation. Would make it super easy to i…
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Use snakemake Reporting function to make better reports of workflows, including basic graphs.
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In order to make the snappy-pipeline more flexible and portable, when #512 is done, the reference may be downloaded or linked automatically, dependent indices can also be built or linked automatically…
tedil updated
4 months ago
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**Snakemake version**
`5.17.0` pip installed
**Describe the bug**
Cannot run workflow `step_1` that depends on sub-one `step_0`. An error is thrown about the output of the sub-workflow not being …
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### What happened?
The minimal workflow covers the UK and Ireland. This is convenient, since it doesn't break in any rule. However, if you choose countries without any hydropower, it breaks on an ass…
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Hello Isicle developers,
I try to reproduce the example of collision cross section. The Isicle was installed correctly according to the message
```
Requirement already satisfied: certifi>=2017.…
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I keep getting the following error:
SyntaxError:
Only output files may be temporary
File "/data/Data/snakemake-workflows/spim_registration/timelapse/Snakefile", line 177, in
Is there a particular …