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Hello, I would like to study the genetic correlations of several diseases in East Asians, and below is the log file. I am wondering why so many SNPs are being excluded due to valid alleles QC. Could y…
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Upstream Fedora Change: https://fedoraproject.org/wiki/Changes/ConfidentialVirtHostAMDSEVSNP
Fedora is introducing support for AMD SEV-SNP, which enables Fedora virtualization hosts to launch confi…
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Hi,
Thank you for developing this very useful package. I was trying to run the sampleSwaps command to check whether my bam files belong to the same cases. But while running the command, I encounter…
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Hello,
The analysis completes successfully, no errors, but the snp-dists folder contains only the .txt output
I've attached the snp matrix, heres my execution command, and some version info
`…
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Hi! I have been trying to convert my genind file to hierfstat so I can calculate some population statistics but I keep on getting an error when I run my code. Here's the error:
```
Error in (funct…
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## Part 1: Bash Script for Bedtools Commands (2.5 pts)
Your script correctly implements the necessary `bedtools` commands for sorting, merging, and subtracting the feature files. The steps for creati…
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Hi there,
Neat function to convert gl2colony - thanks! I managed to produce .dat file and get COLONY to run analysis. However, it immediately flagged 'Offspring ID, 4670, not found in the offsprin…
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I have successfully run ./pleio.py with the example data sets. But after that, when I run example.R, errors occurred at" pleioplot(snp, traits, rg_matrix, sumstats, pleioin, pleiores, h2, snp_referenc…
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Hello,
For input files containing only SNPs, do I need to do anything different? Or Do I just put one site per locus as below:
```
4 1
ind1^pop1 A
ind2^pop1 A
ind3^pop2 T
ind4^po…
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Dear. Clive and Tade
I have 2 sumstats file (1 sumstats from plink and 1 downloaded from GWAS catalog). I tried to run bridgePRS using these two sumstats and it ended
AttributeError: 'Sumstats…