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Follow-up for #1861
- [ ] Fix bugs related to toggling 2D/3D and image layer visibility
- [ ] Generalize to multiple obsTypes for segmentations
- [ ] Fix bugs related to traversing cell sets tre…
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Hello, I'm trying to build a 3D model using my own spatial slice information, the integration process is as follows, the slices have been aligned
`adata_list_coords = [adata.obsm['align_spatial_3d'] …
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# Overview
It is a very common practice when data packages or data resources are associated with some spatial information (i.e. "locations"). There are already well-defined specifications to build …
roll updated
2 months ago
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I'm trying to create a function that extracts the necessary information directly from adata files
```
def annData_converter(
sc_adata, st_adata, sc_annotation="ann_level_3_transferred_label…
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Thank you for your contribution to NEST!
My question is, can the NEST approach be applied to the analysis of the relationship between brain measurements and annotation maps (e.g., the neuroreceptor…
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## Summary
Need to create a strong draft of this module so that we can revise and eventually offer this section of the course.
## Sub-Tasks
- [x] Draft module skeleton
- [x] Draft learning o…
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Hello,how do you make the event frame spatial alignment? 0.o
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### Describe the bug
Some types of mek conduit will not be saved to AE Spatial dimension
### How to reproduce the bug
1. Save these items to AE space(see pic)
![image](https://github.com/Applied…
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Hi, I'm trying to use STAligner to integrate Curioseeker slide-seq samples together. When running Cal_Spatial_Net, I run into the following error: AttributeError: 'numpy.ndarray' object has no attribu…
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I wrote some code to add a coordinate reference system to a NCDataset, that might be useful for others, and perhaps can start a discussion on integrating a form of this into the package if desired.
…
visr updated
2 months ago