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As a novice user of PASTE2, I'm truly grateful for the provision of such a robust 3D spatial transcriptome reconstruction tool. Having successfully replicated results using the demo data, I'm now conf…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/sgunz/sosta
Confirm the following by editing each…
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I am currently working with Visium V1 data, and the Space Ranger spatial output includes a "hires" image. However, since I am working with very small tissue samples, the "hires" image is not of suffic…
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Hi,
I want to analyze the complicated laser envelope I am trying to prepare with the help of Lasy. It might be helpful to make sure that all is well.
To do so, I am trying to visualize the hdf…
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Thanks for this great toolbox! I would be interested in creating surrogate maps that can handle a binary input image (which includes cortical + sub-cortical regions, but this seems to be another issue…
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Hi, I have updated my Spectre to 1.2.0, and also updated R and R studio to the latest build.
When I run the new advanced spatial workflow, everything works great and the addition of the regions and…
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Thanks for the wonderful tool!
I was wondering whether it would be okay to perform MILO analysis based on a different latent space and KNN than those used for building the initial UMAP and clusters…
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# Adrián Cidre - Introduction to Spatial Data Analysis and GIS in R
[https://adrian-cidre.com/02_courses/03_spatial_data_en](https://adrian-cidre.com/02_courses/03_spatial_data_en)
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https://github.com/agaos1/R_for_sea_turtle_spatial_analysis/blob/f6dd5b40fbc907bbe50da4b45c3b7be3d21bd41f/1_Filtering%20and%20processing%20location%20data.qmd#L60
Was planning to get things running…
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Summary:
The "Open Source GIS Tool for Water Harvesting Planning in Indian Cities" aims to develop a user-friendly and accessible GIS tool to support sustainable water management in urban areas acr…