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Hello
I intend to use vg giraffe to align the many illumina pair-end short reads and then use vg call to determine the variants. But I actually do not find the way to combine the individual sample vc…
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**1. What were you trying to do?**
calling structural variation after mapping long-read data on whole genome pangenome graph
**2. What did you want to happen?**
create a VCF file which contai…
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It would be really great to have HGVS notation (e.g. `NG_012232.1:g.19_21del`) as a standard MOLGENIS datatype with built-in validation. This would solve issues with VCF-style notation such as differe…
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Areas of science to pull datasets/problems from:
Natural sciences
* Biology
* Ecology
* Evolution
* Microbiology
* Physiology
* Chemistry
* Materials science
* Organic chemistry
* Geology…
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Hi, Thank you for creating Sim-it. I enjoyed your benchmarking paper and I have been trying to run Sim-it. I am trying to run it on a single chromosome (26 Mb). I have tried running it with the defaul…
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### Describe the problem
I'd like to be able to override some styles (margins, paddings, colors) for a component I import in a higher order component.
### Describe the proposed solution
Styled c…
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## Motivation
Pangenomes are key to understanding the distribution of gene content and synteny across closely related genomes. Currently, the driving force behind this strategy is sequence alignmen…
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- [ ] Add the text search bar at the top of the facets panel. Support search by study codes and study names #3014
- [ ] add Showing 1 - 10 of 28 above the table #3130
- [ ] Facets panel: implement s…
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>Parameterizing the approximate posterior of a generative model with neural networks has become a common theme in recent machine learning research. While providing appealing flexibility, this approach…