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Hi, I have some questions while using the msisensor2, the description is "msi high: msi score >= 20%” in the offficial website (http://niulab.scgrid.cn/msisensor2/#services), while I also found that …
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some bundles use google drive to save large files, and the data are hosted in another place, thus we can update them
cc @KumoLiu @Nic-Ma
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### Description
We want to update SPM12 and CAT12 to a more recent version; it probably makes sense to update both at the same time given their interdependence, and carefully test several scenarios…
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Hi,
Recently I am working on CNV analysis with CNVkit tool.
For now, I analyse CNV without use gender parameter. So if my sample come from a woman, my results include loss of Y chromosome. This …
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bash-4.2$ /data/CCRBioinfo/dalgleishjl/sv_mapping/svaba/bin/svaba run -t PAMHYN_Tumor.realigned.md.bam -n PAMHYN_Normal.realigned.md.bam -a PAMHYN_discovery_chr22 -k chr22 -G ucsc.hg19.fa -p 2
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Currently, SCT has different machine learning and deep learning models. These models don't currently have a framework to easily retrain them on custom data (or the models are in Tensorflow). Ivado-med…
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https://tools.cornerstonejs.org/ can't and tools's api docs can't visit / build
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### Thank you so much for such an amazing model. With such high capabilities.
I have a few doubts ,
I ran the pred_psuedo.py inference , following the repo instructions, like this :
`(universalm…
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Thank you for this wonderful tool. It's great to have logFC and allele frequency profile in the same plot as previously I have to generate them by myself with lots of efforts. It has lots of advantage…
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Hello!
I've seen in the changelog that for DUPs the start position was changed from 0-based to 1-based. What's the case for the rest of the variants, are they 0-based or 1-based?
Best regards,
…