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2024oct1 has fewer gene-protein conflations (19,701,538) than 2024aug18 (21,431,316) and slightly fewer info-content values (3,345,015) than 2024aug18 (3,346,582). We should figure out why this is.
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Hello and thanks for developing these tools.
I am trying to conduct an enrichment analysis and a using goatools within a conda environment hosted on a remote computing cluster.
I am just runnin…
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SRP-dependent cotranslational protein targeting to membrane
has lots of ribosomeal proteins annotated to it by Reactome TAS.
But the ribosome is the target of the targeting pathway
(this …
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The PMID:25211582 has not been integrated into `human_protein_citations_mutation_literature.csv` because it has been replaced with PMID:25296354 (https://pubmed.ncbi.nlm.nih.gov/25296354/).
In the…
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We also need to add cleaved protein chain names subsection.
See [uniprotkb example](https://www.uniprot.org/uniprot/P14210#names_and_taxonomy)
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Basic example (provided by Anushya):
http://panthertest2.usc.edu/services/ortholog/matchOrtho.jsp?format=json&organism=9606&targetOrganism=10090,9913,83333&geneInputList=brca1&orthologType=all
I…
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Need to implement a list init api which takes a table id as input and returns list of columns supported by the table.
The response needs to contain id, name, classification/category.
**Would lik…
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Sometimes an isoform version of the canonical gene ID is used to annotate a causal pathway model. We should update the GO-CAM API's `getGPModelsWith2CausalMFs` SPARQL [query](https://github.com/geneon…
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Hi,
In trying to sort out and correct the 'type' entry in Column 12 of the WB GAF, I was also looking into why we have a small percentage of entries in the file that have lines with 'type' protein …
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Dear author,
I got my results csv file with empty Gene-Ontology-Term and Interpro-ID (Description) fields. I am wondering how I can add those fields to the results, especially the GO term. I only u…