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Ideally, we should account for WGD (baseline is 4 copies) when analyzing hyperploid tumors (e.g. TNBC5), which should lead to better model fit and prediction stability
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Hi, with the help of Rob I managed to get a Rust BD Rhapsody analysis tool to work (https://github.com/stela2502/Rustody).
It supports all versions of BD's beads at the moment, but not the (new) whol…
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[Breaking Lander-Waterman's Coverage Bound](http://biorxiv.org/content/early/2016/06/23/060384) - assembly
[Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads.](https://w…
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In many whole genome _de novo_ sequencing project, the scaffolds and contigs are not assembled into pseudomolecules. As a result, it's very difficult to determine exact ratio between subject genome an…
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Hi there! We've done whole genome sequencing for six individuals of a species and one of the six was used to generate a reference assembly. We then ran the psmc on each of the six individuals (all map…
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collecting references and annotations --
1. [VarCover: Allele Min-Set Cover Software](https://www.sciencedirect.com/science/article/abs/pii/S1525157819304143)
>To facilitate reference-material s…
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Hello,
Are you still looking for data from PCR-barcoded reads? I have whole genome sequence data from Tegeticula (yucca moths, a small insect with a moderately sized genome - ~400GB).
I am inte…
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Hello,
I hope that you can help me with this :
Can I use nanocaller on my fastq.gz files generated using ONT minion technology ?
Can I use it to detect variants in fungus ?
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cc @turbomam
If we need to represent Illumina NovaSeq 6000 S4, I assume we would create a subclass of
id: OBI:0400043
name: flow cell
def: "Aparatus in the fluidic subsystem where the sheath…
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Thanks for the good material. I have a question about the alignment using bowtie2, here according to [`mutation_sequencing_analysis_script.sh`](https://github.com/aldob/iMUT-seq/blob/4476db76f2058d0af…