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Hi @shoryaconsul, nice paper on the XHap! It's unexpected that transformer can even capture relationship/information that exists among non-overlapping reads. Do you have any insights on:
1. What's …
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Hello,
Thanks for the method, I have mouse single cell RNA seq data how I can apply this SClineager to mouse datasets, I have allele specific read count file for each SNPs a test data, my data lin…
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hello,
I got an error when I used mathphaser:
/share/home/yzwl_hanxs/anaconda3/envs/danbeixing/bin/meth_phaser_parallel:235: FutureWarning: When grouping with a length-1 list-like, you will need to …
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Hi, I'm working on a project to extract features from PAAD patients from the ICGC database for neoantigen immunogenicity prediction in ML. This project follows the steps taken by the model creators. I…
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**Have you checked the FAQ? https://github.com/google/deepvariant/blob/r1.6.1/docs/FAQ.md**:
Yes
**Describe the issue:**
I mapped the WGS data to pangenome graph with `vg giraffe`. When calling v…
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Using
```
bcftools norm -m - --multi-overlaps . test.vcf
```
on the following input
```
##fileformat=VCFv4.2
##reference=ref.fasta
##contig=
##FORMAT=
#CHROM POS ID REF ALT QUAL FILTER INFO…
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[SNP.bi.mis.dp4.ratio.maf5perc.g9_noAqua_noRepl_geoOrd_PopYear_scaff_noHWE_LD_Hobs2_related_EC_NS_3gps.txt](https://github.com/timothyfrasier/related/files/2457675/SNP.bi.mis.dp4.ratio.maf5perc.g9_n…
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Hi,
Quick question. In longphase phase program, does it care about the GT field of the input vcf file? For example, if the GT field is ./., will longphase skip that variants for phasing?
Thanks,…
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https://hail.is/hail/overview.html#overview-vds
This would well be our storage library.
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Hello, When selecting the input software for MOPline, I only had the results from Manta, CNVnator, and Wham softwares. Given that MOPline requires inputs from seven software, I utilized only three of …