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vatlab
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VarStore
High Efficiency genotype data storage library
http://vatlab.github.io/VarStore/
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try vcf importing into hdf5 using scikit-allel
#18
jma7
opened
6 years ago
5
compare performance of sqlite and hdf5 version of variantTools
#17
jma7
opened
6 years ago
1
TileDB and GenomeDB
#16
BoPeng
opened
7 years ago
0
Re-organization of vat-dp and the goals of this project.
#15
BoPeng
opened
7 years ago
4
How should we deal with imputed variants
#14
gaow
opened
7 years ago
0
HDF5 for genotype storage
#13
jma7
opened
7 years ago
9
PLINK data model
#12
gaow
opened
7 years ago
1
Limitations of vtools genotype database
#11
gaow
closed
7 years ago
0
How should we store phase information
#10
gaow
opened
7 years ago
3
Li Heng's BGT tool/data format
#9
BoPeng
opened
7 years ago
5
A matrix-like storage format
#8
BoPeng
opened
7 years ago
36
Rename project to GDP
#7
BoPeng
closed
7 years ago
4
Centralized data portal or data aggregators
#6
BoPeng
opened
7 years ago
0
Authorization issue for vat-dp access
#5
BoPeng
opened
7 years ago
0
asyncio + uvloop
#4
BoPeng
opened
7 years ago
1
A tool from Broad
#3
gaow
opened
7 years ago
0
cyvcf2
#2
BoPeng
opened
7 years ago
0
information provided by vat-dp
#1
jma7
opened
7 years ago
1