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https://mp.weixin.qq.com/s/-91dDICiNcx86SNXvnfqOw
ixxmu updated
2 months ago
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Dear @sgalkina
pipeline : $vamb --outdir ${outdir} \
--fasta ${fname}.contigs_headNoSpace.fa \
--bamfiles ${fname}_sort_changed_header.bam
The error is as follo…
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https://mp.weixin.qq.com/s/Wp4GiKnAN6rOh5JhlOe0IA
ixxmu updated
1 month ago
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Hi there,
I used this command to download standard library:
kraken2-build --use-ftp --standard --threads 24 --db database/
and the error message shows like this:
Downloading nucleotide gb acce…
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Hi,
I'm running into issues with the format of the [genes.gtf ](s3://ngi-igenomes/igenomes/Homo_sapiens/NCBI/GRCh38/Annotation/Genes/)which is referenced in v1.4.2 [/conf/igenomes.config](https://gi…
tweep updated
10 months ago
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Dears SqueezeMeta developpers,
I've been trying to analyse my data for several days now but I always get an error on step 10. The first sample passes but when it wants to start the 2nd sample, I alwa…
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Is it possible to pass alignment parameters to blast using this program? For example specifying word_size.
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Due to the bug described in https://github.com/overture-stack/SONG/issues/646, all the fields affected by that bug must be audited to identify which fields (if any) do not have matching metadata with …
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Hi,
I executed the following commands:
**nucmer -c 1000 -l 40 -t 16 -p newTGY ref.fa TGY.qry.fasta**
**delta-filter -m -i 90 -l 100 newTGY.delta > newTGY.mdelta**
**show-coords -THrd new…