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Currently all PR's on data-portal are failing with some error like:
```
> cellxgene-data-portal@0.1.0 prettier-check
> npx prettier --check .
glob error [Error: EACCES: permission denied, scandir '/r…
seve updated
10 months ago
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The highly variable gene function doesn't work with using a query with coords. The same error appears when calling `query.n_vars`.
```
query = census["census_data"]["homo_sapiens"].axis_query(
…
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### Reproduction Steps
1. Go to https://cellxgene.cziscience.com/gene-expression - _a backend query is sent to fetch data but this is quite fast_
2. Expand "Brain" Tissue and _info icon_ on "stem ce…
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## Bug report
Hi all - [a user identified](https://github.com/chanzuckerberg/cellxgene-census/issues/862) that plotting gene expression is not functional in all of the explorer instances for this c…
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The [trust review](https://czi.atlassian.net/wiki/spaces/SECENG/pages/2704408577/2023-04-20+Security+Engineering+Office+Hours+Census+Data+Hosting+Architecture) requested that we move the existing publ…
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Hi,
I am having trouble opening my files. I have followed the instructions precisely for the installation. I made a conda environment and then installed cellxgene with `pip install cellxgene`. Nonet…
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Hello all,
thank you lots for providing the notebooks!
I am currently using the HLCA core for a project on pseudo time inference and need to correct the data for batch effects before processing it…
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# Design
See [schema 4](https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/4.0.0/schema.md#observation_joinid).
The current Census implementation is a base85 (rfc 1924) hash…
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With the exception of Accessibility assays, the requirements for raw matrices have been updated to include:
Each cell MUST contain at least one non-zero value. All non-zero values MUST be positive …
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Hi there
I'm trying to run the pre-trained scGPT models on a custom dataset with the gene names specified in the Ensembl convention.
However, scGPT seems to use a mix, which I'm trying to understa…